Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015883311.1_cds_XP_016438438.1_34099
CDS Infomation

[gene=LOC107764391] [db_xref=GeneID:107764391] [protein=E3 ubiquitin-protein ligase RLIM-like] [protein_id=XP_016438438.1] [location=join(15269..15382,16304..17251,17334..17507,19985..20127,20350..20460,20643..20724)] [gbkey=CDS]
Sequence

ATGGGTTCAAGCAGTAGCCGTTTGGGGTCACACCCAAGTCGCCCAAATCGCACCAAATAC
ACATTTTCATCCATTTTCATATGTGGGGCTTCATCCTCTCGCTCAGCCATTGAGATGGAA
GATGATCCAGCTGAATTGCTGGTGGATTCTGCAGAACACGCTGACAAAGGAAAGCTCCAA
AACTCTGAGAAGGACCCGTCAGCTGATTTTATTCCCTCCCGAGCTGAACGTGGAGCTTCA
TCTGCGAGCAATTTGGTAAATAGTGAAAAATCTGCATCTGGAGATGCTAATGTTCAGGGA
GGTAACCGAAGAGAAAACTCAACCAAAGACATGGAATTAGTCACTCGATATCGACCTGGA
AGTACAGGTTGTGAAACTGCTAGTACGTCTCGAGACGACAGACCATTTCCCTATCCACTT
TCTTTAAACAAAAGGGCAGAAAATGATGTTGTTAATAGTGTTGATACTACAGCGAATGGA
GATGTCTCTCAAATATTTGCTGGGTCCTCTCGTTCTAGCAGTCCATTGTATCACGGAAAC
GGAGAGTCTTCATCAAGTGAAGATTTTGTTGTAAATCATACAAATGAAATCCTTATCTTC
AATAATTCCGATTCTGGTTCTGTATCTGTTCTTTCGGATTCTTCACTTACGCCACATTTG
GCGGGAGATGATTTGCGTCAGGATACACCATCATCGGGTCTCGAGTTTCTGGTGTCAGAA
AGGGAAGAGAGTTTAAGAGATGGAAGTGCACTTCACGTTGATATGGCGAATGTCTCTCCC
AATGTTTTCTCTAATAGTCCTGCTGAAATAACTAGTCGCGAAGCAAGACGGAATAGTAGA
AGACTTTTTTGGGATTCTTTTTCAAGGAGAAGTCCTAGGAGGCGTGCTGATCCTCGGAAT
TTTCGTTTTCCAAATGATTATTCAGACGATGTAGTATCTCATGACAGGTTACTGCTGGAC
TTCAGCGATAATTCCCTTCATGAGGGGGCTGGAGGTAATTTTCCATCAAATGGAAGTCGG
ACTAGTGGGAGTAATGAACGGCGACGACATTCCAGATCTGAGATGTGGGAAAGACTTCCT
GGTGGTCTTATTGCTAGTGATCATCGAAGTGCAACTTGTCCAACTGGGATTCACGCAGAT
GGCCCATGTTCATGTGAGACAATTTTGATGAGTCGAGAAACTGGCAGTCGCGCAAGTATA
TCACGAATAGTTATGCTTGCTGAGGCATTGTTTGAGGTCCTGGATGAAATACATCGGCAA
CCGATGTCATTGTCCTTATCTGTATTATCACTTCCAGCTCCAGAGTCAGTTGTGGACTCA
TTCCCAGTGAAGAGTTACTCAAAATCAGACGAAGTAGATACTGGCAACAATGTTCCACAG
TGTCACATATGCTTAGCCGAGTATGAGGACGGAGATAAAATACGAGTTCTACCTTGTCAC
CATGAGTTTCATGTATCATGTGTGGATAAATGGCTCAAAGAGATACACGGTGTATGCCCA
CTTTGCAGAGGAGATGTCCGAAATGGTTTTGTTGAAGGTTCAGTTTCTAACTCAGCAGTA
CCTTCTCTTTGA

Peptide Sequence

PEP ID

XP_016438438.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tabacum]
Sequence

MGSSSSRLGSHPSRPNRTKYTFSSIFICGASSSRSAIEMEDDPAELLVDSAEHADKGKLQ
NSEKDPSADFIPSRAERGASSASNLVNSEKSASGDANVQGGNRRENSTKDMELVTRYRPG
STGCETASTSRDDRPFPYPLSLNKRAENDVVNSVDTTANGDVSQIFAGSSRSSSPLYHGN
GESSSSEDFVVNHTNEILIFNNSDSGSVSVLSDSSLTPHLAGDDLRQDTPSSGLEFLVSE
REESLRDGSALHVDMANVSPNVFSNSPAEITSREARRNSRRLFWDSFSRRSPRRRADPRN
FRFPNDYSDDVVSHDRLLLDFSDNSLHEGAGGNFPSNGSRTSGSNERRRHSRSEMWERLP
GGLIASDHRSATCPTGIHADGPCSCETILMSRETGSRASISRIVMLAEALFEVLDEIHRQ
PMSLSLSVLSLPAPESVVDSFPVKSYSKSDEVDTGNNVPQCHICLAEYEDGDKIRVLPCH
HEFHVSCVDKWLKEIHGVCPLCRGDVRNGFVEGSVSNSAVPSL

Transcript Sequence

Gene sequence data has not been registered.